tshirtsoreo.blogg.se - Softberry kai screen replay

#SOFTBERRY KAI SCREEN REPLAY MAC OSX#
#SOFTBERRY KAI SCREEN REPLAY LICENSE#

SNP discovery and annotation pipeline ( see flowchart).OligoZipRNA ( see flowchart): Program for assembling RNASeq reads to RNA transcripts, selection of alternative transcript groups and identification of RNA and protein coding subsets.ReadsMap: Program for mapping genomic and RNASeq reads to a genome, with identification of splice sites and SNPs.OligozipDNA ( see flowchart): Program for sequence assembly that includes error correction, contig and scaffold building.Analysis of NGS data: genome and transcriptome assembling, reads mapping, SNP discovery and evaluation:.FindTerm - Finding Terminators in bacterial genomes.BPROM - prediction of bacterial promoters.FEX - finding potential 5'-, internal and 3'-coding exons.FSPLICE - finding splice sites in genomic DNA.BESTORF - finding potential coding fragment EST/mRNA.Which perform genefinding with support of related genomic, or protein or cDNA sequence, respectively, programs for Best ORF and splice sites, non-standard splice sites identification. Gene prediction program with parameters for Fgenesh: the fastest ab initio HMM-based eukaryotic.

Eukaryotic and Bacterial genes and functional sites identification and genome annotation:.

It provides functional and pathway annotation of predicted proteins with the user selected databases such as NR, COGS, EggNOG, KEGG and etc.

Bacterial genome annotation pipeline Fgenesb ( see flowchart) predicts genes (including RNA genes), operons, promoters and terminators.

See examples in Sequence annotation explorer.

Eukaryotic genome annotation pipeline Fgenesh++ ( see flowchart) that includes the following steps:Ī) Mapping known genes/mRNAs from RefSeq or other sources (EST_Map program) ī) Mapping known proteins (typically from NR database) to a genome Ĭ) Identification of splice sites by mapping a set of known ESTs or NGS RNASeq reads ĭ) Identification of gene models that involve alternative splicing.

#SOFTBERRY KAI SCREEN REPLAY MAC OSX#

Most of our programs are available for major Unix-derived platforms, such as Linux, Mac OSX and Cygwin environment under Windows. Commercial licenses are obviously more expensive: please inquire for more details.

#SOFTBERRY KAI SCREEN REPLAY LICENSE#

For instance, such license to EST_Map or Prot_Map is $1,000 per year, FGENESH - $1,640 for the first year and $1,120 annual renewals etc. Fees for academic single-user licenses vary from several hundred to a few thousand dollars per year. Typically, we offer only two types of licenses: personal single-user and site license. We license our products on subscription basis, with licensing fees payable annually. Complete list of products is available upon request. Most programs that are available for online testing can also be licensed, even if they are not in this list. Below is a partial list of Softberry products.